CompVision

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in MATLAB

» mcc -m myfunction.m

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create a script:

#!/bin/sh

module load matlab

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/pkg/matlab/7.14_r2012a/runtime/glnxa64:/pkg/matlab/7.14_r2012a/sys/java/jre/glnxa64/jre/lib/amd64/server/

export XAPPLRESDIR=/pkg/matlab/7.14_r2012a/X11/app-defaults/

ABSPATH/myfunction $1 $2 > $3

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module load sge

qsub -q ttn.q ABSPATH/myfunction.sh hello world ABSPATH/output.txt

Where ABSPATH should be replaced with the absolute path of each file (e.g. /home/fowlkes). Absolute paths should be used everywhere since qsub doesn't run in the same cwd.