CompVision

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<h1>Script Tricks</h1> <div class="level1"> <p> Here's the meaning of useful parameters that we can add in the header of our job scripts. </p> <p> #$ -N NAME = Names our job in the cluster as specified in NAME </p> <p> #$ -q QUEUE = Automatically sends our job to the specified queue in QUEUE, so we don't need to specify it in the qsub command. </p> <p> #$ -M EMAIL = Sends notifications of the job status to the specified address in EMAIL, according to criteria below </p> <p> #$ -m beas = Send you email of job status (b)egin, (e)rror, (a)bort, (s)suspend </p> <p> Sample header for some script myscript.sh: </p> <hr /> <p> #!/bin/csh </p> <p> # </p> <p> #$ -N parsedisco </p> <p> #$ -M someaddress@uci.edu </p> <p> #$ -m beas </p> <p> #$ -q ttn.q </p> <hr /> <p> more info at <a href="http://hpc.oit.uci.edu/running-jobs" class="urlextern" title="http://hpc.oit.uci.edu/running-jobs" rel="nofollow">http://hpc.oit.uci.edu/running-jobs</a> </p> </div> <h1>Log files</h1> <div class="level1"> <p> Another cool thing from SGE is that it automatically creates a log file in the folder where you make the qsub call, and leaves two log files, JOBNAME.eJOBID and JOBNAME.oJOBID. 'e' is for error messages and 'o' is for standard output. </p> </div>